![]() ![]() ![]() This command restores the stat.h file for a missing header problem in libboost compilation. Now open up a terminal window inside the build folder and type the following command that is needed for proper libboost-1.54 compilation from the source code provided.Įxport CPLUS_INCLUDE_PATH=/usr/include/x86_64-linux-gnu:$CPLUS_INCLUDE_PATH Once you extracted bcl2fastq folder create a folder named build next to bcl2fastq folder. Steps to create these deb packages your own.ĭownload the latest source code from illumina website and extract the bcl2fastq folder inside another empty folder that would keep your work tidy. Once these are done successfully follow the steps below. ![]() These commands will install gcc 7.3 in 18.04 and gcc 8.2 in 18.10. Sudo apt-get install gcc build-essentials libbz2-dev zlib1g-dev I use VM or docker image because it is much more handy and I can keep that for later versions to build if needed.Ģ- Run the following commands to get your compilers and libs up to date sudo apt-get update Internet links are full of recommendations of how to get this thing done on older versions of ubuntu or other linux distro but I tried this on the latest stable and rolling ubuntu.ġ- Get Ubuntu 18.04 or 18.10 running on a computer or a VM. Here are the things you need to get things up and running for this compilation to go successfully. I am publishing the steps that I did to generate these deb files so anyone can make their of if they don't want to download but still need a private repository for themselves to keep a copy of working software. As a hobbyist I dealt with FOSS for a long time and after I quit wetlab business as a researcher I decided to give my linux and math skills a go for bioinformatics and it has paid pretty well.Īgain I am sorry if any of these links felt like a scam but believe me it is not. I have been in bioinformatics for about 5 years and before that I was all a wetlab guy. I am a long time registered user in GATK forums my nickname is SkyWarrior there. ![]()
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